BART, an R shiny web application for microarray analysis（基于R的在线GEO 芯片表达数据挖掘工具）
GREIN, GEO RNA-seq Experiments Interactive Navigator（基于GEO RNA-seq测序表达数据工具）
Tools4miRs, one place to gather all the tools for miRNA analysis
miRToolsGallery, a database of miRNA tools.
ANEMONE, a tool to take your differentially expressed genes of interest and cluster these genes based on the motifs that are associated with each of them（表达基因聚类分析）
BURNS, Bioinformatics Utility for RevealiNg Senescence（基于RNA-Seq的基因年龄预测工具）
iLincs, an integrative web-based platform for analysis of omics data and signatures of cellular perturbations（交互性疾病与细胞扰动组学标签分析）
RICK (RNA Interactive Computing Kit)（RNA交互分析工具）
Perseus, a comprehensive portfolio of statistical tools for high-dimensional omics data analysis covering normalization, pattern recognition, time-series analysis, cross-omics comparisons and multiple-hypothesis testing, supporting biological and biomedical researchers in interpreting protein quantification, interaction and post-translational modification data.（范例）
IntAct, a freely available, open source database system and analysis tools for molecular interaction data（分子互作分析）
STRING: functional protein association networks
HuRI, the Human Reference Interactome.
PRIDE, The raw and analysed proteomic data.
PINA, an integrated platform for protein interaction network construction, filtering, analysis, visualization, and management.